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  • Vanderbilt University
  • Nashville, TN

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  1. clb-detection-toolkit clb-detection-toolkit Public

    Bioinformatics toolkit for detecting colibactin (pks island) in metagenomic data using three complementary approaches: read-based mapping, assembly-based validation, and protein homology search

    Python 1 1

  2. virchow2-st-2uM virchow2-st-2uM Public

    Predicting 2um-resolution gene expression from H&E histology using Virchow2 + Poisson Loss

    Python

  3. polymath-v4 polymath-v4 Public

    Lean, execution-ready knowledge system for scientific papers and code. PostgreSQL-first with local BGE-M3 embeddings and Gemini batch API.

    Python

  4. rubric-rewards-training rubric-rewards-training Public

    Local implementation of Meta's Rubric Rewards methodology (arxiv 2512.23707) for training AI co-scientists using QLoRA on RTX 5090. 830 Vanderbilt research papers across biomedical, ML, and spatial…

    Python