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@talmolab

Talmo Lab at the Salk Institute

Talmo Pereira's research group at the Salk Institute for Biological Studies.

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  1. sleap sleap Public

    A deep learning framework for multi-animal pose tracking.

    Python 548 123

  2. sleap-io sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    Python 21 14

  3. sleap-anipose sleap-anipose Public

    SLEAP to Anipose triangulation pipeline for 3D multi-animal pose tracking.

    Python 27 6

  4. sleap-roots sleap-roots Public

    Analysis tools for SLEAP-based plant root phenotyping.

    Python 13

  5. dreem dreem Public

    DREEM Relates Every Entities' Motion (DREEM). Global Tracking Transformers for biological multi-object tracking.

    Python 13 3

  6. sleap-nn sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    Python 14 7

Repositories

Showing 10 of 81 repositories
  • sleap-io.js Public
    talmolab/sleap-io.js’s past year of commit activity
    TypeScript 0 BSD-3-Clause 0 1 0 Updated Jan 19, 2026
  • sleap-nn Public

    Neural network backend for training and inference for animal pose estimation.

    talmolab/sleap-nn’s past year of commit activity
    Python 14 GPL-3.0 7 16 4 Updated Jan 19, 2026
  • vibes Public

    Vibed tools and experiments.

    talmolab/vibes’s past year of commit activity
    HTML 0 BSD-3-Clause 0 0 6 Updated Jan 19, 2026
  • sleap-io Public

    Standalone utilities for SLEAP pose tracking data.

    talmolab/sleap-io’s past year of commit activity
    Python 21 BSD-3-Clause 14 7 0 Updated Jan 18, 2026
  • track-mjx Public
    talmolab/track-mjx’s past year of commit activity
    Jupyter Notebook 12 BSD-3-Clause 0 48 3 Updated Jan 17, 2026
  • sleap-mot Public

    Standalone multi-object tracking.

    talmolab/sleap-mot’s past year of commit activity
    Python 1 BSD-3-Clause 0 8 3 Updated Jan 17, 2026
  • sleap Public

    A deep learning framework for multi-animal pose tracking.

    talmolab/sleap’s past year of commit activity
    Python 548 BSD-3-Clause-Clear 123 101 (4 issues need help) 13 Updated Jan 17, 2026
  • vnl-playground Public

    Virtual Neuro Lab (VNL). Deep Reinforcement Learning Environments in JAX with MuJoCo MJX/Playground

    talmolab/vnl-playground’s past year of commit activity
    Jupyter Notebook 6 BSD-3-Clause 0 6 3 Updated Jan 17, 2026
  • lablink Public
    talmolab/lablink’s past year of commit activity
    Python 3 BSD-2-Clause 0 23 0 Updated Jan 16, 2026
  • sleap-rtc Public

    Remote backend for training and inference for animal pose estimation.

    talmolab/sleap-rtc’s past year of commit activity
    Python 0 MIT 0 0 2 Updated Jan 15, 2026

People

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