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Pull requests: nf-core/modules
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Update all deeptools conda environment YAML files to version 3.5.6
#9685
opened Jan 16, 2026 by
bentyeh
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2 of 17 tasks
Fix variable redeclarations for strict syntax compliance
#9684
opened Jan 16, 2026 by
ewels
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Fix deprecation message declarations for strict syntax compliance
#9682
opened Jan 16, 2026 by
ewels
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Fix environment variable references for strict syntax compliance
#9681
opened Jan 16, 2026 by
ewels
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version topics, strict syntax, stub tests
#9679
opened Jan 16, 2026 by
vagkaratzas
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5 of 17 tasks
fix(picard/markduplicates): add missing bai index file to stub output
#9676
opened Jan 16, 2026 by
adamrtalbot
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Fix
abundance_differential_filter to only generate one normalized matrix with dream
#9675
opened Jan 15, 2026 by
delfiterradas
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17 tasks
feat(merquryfk/merquryfk): use topic versions and emit all images in single channel
#9672
opened Jan 15, 2026 by
prototaxites
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3 of 17 tasks
feat: hisat3n/build module
Ready for Review
#9668
opened Jan 15, 2026 by
emmcauley
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12 of 17 tasks
fix(fastk/merge): use topic versions and update snapshots
Ready for Review
#9666
opened Jan 15, 2026 by
prototaxites
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3 of 17 tasks
new subworkflow - fastq shortreads preprocess qc
#9665
opened Jan 15, 2026 by
vagkaratzas
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8 of 17 tasks
Add tmb module
new module
Adding a new module
Ready for Review
#9660
opened Jan 15, 2026 by
georgiakes
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11 of 17 tasks
Fix cellranger multi's singplex flex failure and add tests
#9652
opened Jan 14, 2026 by
tgelafr-pfzr
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Draft
3 of 9 tasks
Bump openms version to 3.5.0 and migrate to version topics
#9638
opened Jan 12, 2026 by
jonasscheid
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17 tasks
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Updated in the last three days: updated:>2026-01-13.