Precision Oncology | Computational Biology | AI in Health
Welcome to the GitHub home of the Bose Lab, based in the Department of Oncology at the Cumming School of Medicine, University of Calgary. We are part of the Arthur J.E. Child Comprehensive Cancer Centre and the Arnie Charbonneau Cancer Institute.
At Bose Lab, we integrate cutting-edge computational methods with high-throughput biological data to solve critical problems in cancer research. Our work sits at the intersection of genomics, immuno-oncology, AI/ML, and clinical translation.
We specialize in:
- 🧠 Multimodal Deep Learning for cancer outcome prediction
- 🧬 Genomic and Spatial Transcriptomic Analysis
- 🧫 Computational Pathology and Digital Histology
- 🧪 Biomarker Discovery for Immunotherapy Response
- 🌍 Open Science and Collaborative Tools for Precision Medicine
Dr. Pinaki Bose
Assistant Professor, Department of Oncology
Cumming School of Medicine, University of Calgary
Canada Research Chair in Precision Health and Cancer Genomics
📚 Google Scholar
| Project | Description | Status |
|---|---|---|
ICI-Response-Predictor |
Deep learning framework for predicting immunotherapy response using multimodal inputs (WSI + ST + Clinical) | 🔬 In progress |
NK-cell-HNSCC |
Single-cell and spatial profiling of NK cells in head & neck cancer | 📊 Analysis & Visualization |
Hybrid Genome Creator Tool |
Pipeline to produce HPV-integrated hybrid human reference genome | ✅ Active |
- PI: Dr. Pinaki Bose (PI)
- Dr. Megha Murali (Research Tech.)
- Dr. Ayan Chanda (Postdoc)
- Dr. Tahsin Hassan Rahit (Postdoc)
- Dr. Daesun Kim (Postdoc)
- Jackson Mclean (MSc Student)
- Jinsu An (PhD Student)
- Maria Mansi (BSc. student)
- Jamie MacDonald
🧑🎓 Recent Alumni:
- Dr. Parisa Ghahremanifard (PhD)
- Ilana Lebon
- Lara Dsouza
- Reid McNeil
We are always looking for enthusiastic researchers and collaborators passionate about computational oncology. If you're interested in:
- Research internships
- Graduate or postdoctoral positions
- Data-driven cancer research collaborations
👉 Reach out via email.
📍 University of Calgary, Cumming School of Medicine
📬 pbose@ucalgary.ca
🌐 www.ucalgary.ca
🔗 Google Scholar
