Check of endpoints of the IPK deployed version at 2025-04-08

[langeipk]

Dear Joseph,

thanks to you and Jens for the new test release of the AGENT BrAPI implementation and Jens for deploing it!

I tested the endpoints that are listed uman raedble at the landing page

https://agent.ipk-gatersleben.de/genotyping/brapi/v2/ (which is not mandatory, but good!)

and those taht are listed in the BrAPI own endpoint to list the implemented endpoints: https://agent.ipk-gatersleben.de/genotyping/brapi/v2/serverinfo

/serverinfo: OK

/samples - retrieve a list of all of the samples, e.g. /genotyping/brapi/v2/samples: OK

/samples/reference_id - retrieve a sample searched by referenceID(ex biosample id: SAMEA*), e.g. /genotyping/brapi/v2/samples/SAMEA111493800: no result found. Furthermore the replace please the human readble error message by an valide JSON response where you could include a error message error message

/callsets - retrieve a list of all callsets, e.g. /genotyping/brapi/v2/callsets: OK

/callsets/reference_id - retrieve a callset searched by referenceID, e.g. /genotyping/brapi/v2/callsets/SAMEA114474862: OK - but also here deliver a alide JSON as result whe no data can be found for a given referenceID or other parameter

/attributes - retrieve a list of all attributes, e.g. /genotyping/brapi/v2/attributes: OK

/attributes/reference_id - retrieve a attribute searched by referenceID(ex ATTRIBUTEDBID:), e.g. /genotyping/brapi/v2/callsets/10352 call set not found - but also here deliver a alide JSON as result whe no data can be found for a given referenceID or other parameter

/attributevalues - retrieve a list of all attributevalues, e.g. /genotyping/brapi/v2/attributevalues : OK

/germplasm: OK

/studies: OK

/observationunits: OK - only issue here is the attribute uploadedBy" - here we should see the person who uploaded it from genebank side to have the direct contactpoint for questions about the content

/observations: OK - only issue here is the attribute uploadedBy" - here we should see the person who uploaded it from genebank side to have the direct contactpoint for questions about the content

A last question: Did you tested Query performance when iterating over the reults using BrAPI pagination?

Thanks for your work!

Matthias